STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE05925.1Protein of unknown function. (278 aa)    
Predicted Functional Partners:
SFE05910.1
Helicase conserved C-terminal domain-containing protein.
 
  
 0.972
SFD36830.1
Ferritin-like.
  
     0.707
SFD97337.1
Type IV secretion system protein VirB5.
    
 0.519
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.515
SFD97387.1
Type IV secretion system protein VirB4.
    
 0.510
SFD97323.1
Type IV secretion system protein VirB9.
    
 0.492
SFD97311.1
Type IV secretion system protein VirB10.
    
 0.489
SFD97415.1
Type IV secretion system protein VirB11.
    
 0.483
SFD97374.1
P-type conjugative transfer protein TrbJ.
    
 0.478
SFD97350.1
Type IV secretion system protein TrbL.
    
 0.463
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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