Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD48697.1 | SFD48723.1 | SAMN04489710_102385 | SAMN04489710_102386 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.999 |
SFD48697.1 | SFD51859.1 | SAMN04489710_102385 | SAMN04489710_10322 | Helicase conserved C-terminal domain-containing protein. | ATP-dependent helicase HrpA. | 0.957 |
SFD48697.1 | SFD56536.1 | SAMN04489710_102385 | SAMN04489710_103289 | Helicase conserved C-terminal domain-containing protein. | Cold shock protein, CspA family. | 0.827 |
SFD48697.1 | SFE06166.1 | SAMN04489710_102385 | SAMN04489710_11321 | Helicase conserved C-terminal domain-containing protein. | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | 0.862 |
SFD48697.1 | SFE27531.1 | SAMN04489710_102385 | SAMN04489710_1242 | Helicase conserved C-terminal domain-containing protein. | Putative mRNA 3-end processing factor. | 0.853 |
SFD48697.1 | SFE30564.1 | SAMN04489710_102385 | SAMN04489710_1273 | Helicase conserved C-terminal domain-containing protein. | Uncharacterized membrane protein YsdA, DUF1294 family. | 0.841 |
SFD48697.1 | SFE32503.1 | SAMN04489710_102385 | SAMN04489710_1306 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.994 |
SFD48697.1 | rpoA | SAMN04489710_102385 | SAMN04489710_106118 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
SFD48697.1 | rpoB | SAMN04489710_102385 | SAMN04489710_11695 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SFD48697.1 | rpoZ | SAMN04489710_102385 | SAMN04489710_114130 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.986 |
SFD48723.1 | SFD48697.1 | SAMN04489710_102386 | SAMN04489710_102385 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.999 |
SFD48723.1 | SFD51859.1 | SAMN04489710_102386 | SAMN04489710_10322 | Hypothetical protein. | ATP-dependent helicase HrpA. | 0.957 |
SFD48723.1 | SFD56536.1 | SAMN04489710_102386 | SAMN04489710_103289 | Hypothetical protein. | Cold shock protein, CspA family. | 0.848 |
SFD48723.1 | SFE06166.1 | SAMN04489710_102386 | SAMN04489710_11321 | Hypothetical protein. | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | 0.862 |
SFD48723.1 | SFE27531.1 | SAMN04489710_102386 | SAMN04489710_1242 | Hypothetical protein. | Putative mRNA 3-end processing factor. | 0.853 |
SFD48723.1 | SFE30564.1 | SAMN04489710_102386 | SAMN04489710_1273 | Hypothetical protein. | Uncharacterized membrane protein YsdA, DUF1294 family. | 0.841 |
SFD48723.1 | SFE32503.1 | SAMN04489710_102386 | SAMN04489710_1306 | Hypothetical protein. | Hypothetical protein. | 0.993 |
SFD48723.1 | rpoA | SAMN04489710_102386 | SAMN04489710_106118 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
SFD48723.1 | rpoB | SAMN04489710_102386 | SAMN04489710_11695 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SFD48723.1 | rpoZ | SAMN04489710_102386 | SAMN04489710_114130 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.986 |
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