STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE10407.1Uncharacterized protein YjcR. (563 aa)    
Predicted Functional Partners:
SFE10422.1
Phage portal protein, PBSX family.
 
    0.996
SFE10390.1
Phage capsid scaffolding protein (GPO) serine peptidase.
 
    0.989
SFE10374.1
Phage major capsid protein, P2 family.
 
    0.988
SFE10357.1
Phage small terminase subunit.
 
    0.987
SFE10215.1
P2 phage tail completion protein R (GpR).
 
    0.986
SFE10328.1
Phage head completion protein (GPL).
 
    0.986
SFE09901.1
Phage tail assembly chaperone protein, E, or 41 or 14.
 
    0.985
SFE10195.1
Phage virion morphogenesis (putative tail completion) protein.
 
    0.984
SFE09846.1
Hypothetical protein.
 
    0.983
SFE09523.1
Bacteriophage replication gene A protein (GPA).
  
  
 0.967
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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