STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE23246.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (325 aa)    
Predicted Functional Partners:
SFE23260.1
Beta-aspartyl-peptidase (threonine type).
 
    0.794
SFE23360.1
D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55.
 
     0.768
SFE23297.1
Glutathione transport system substrate-binding protein.
 
     0.580
SFE23343.1
L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58.
 
    0.541
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.472
SFD92975.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
    
 0.469
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.462
SFE23280.1
Glutathione transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
    0.460
SFE23229.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.435
SFE23374.1
Aspartate racemase.
 
     0.433
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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