STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE26485.1TRAP-type C4-dicarboxylate transport system, small permease component. (176 aa)    
Predicted Functional Partners:
SFE26459.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.992
SFE26518.1
TRAP transporter, DctM subunit.
 
 0.979
SFD39573.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.795
SFD96664.1
TRAP transporter, DctM subunit.
 
 0.794
SFE03120.1
TRAP transporter, DctM subunit.
 
 0.790
SFD92931.1
TRAP transporter, DctM subunit.
 
 0.784
SFD62012.1
TRAP transporter, DctM subunit.
 
 0.776
SFD43521.1
TRAP transporter, DctM subunit.
 
 0.761
SFE26543.1
6-phosphogluconolactonase.
    
  0.758
SFD99490.1
malonyl-CoA decarboxylase.
  
 0.674
Your Current Organism:
Acidovorax konjaci
NCBI taxonomy Id: 32040
Other names: A. konjaci, ATCC 33996, Acidivorax konjaci, CCUG 17394, CFBP 4460, CIP 106439, DSM 7481, ICMP 7733, JCM 2397, LMG 5691, LMG:5691, NCPPB 3698, PDDCC 7733, PDDCC:7733, Pseudomonas avenae subsp. konjaci, Pseudomonas pseudoalcaligenes subsp. konjaci, strain K2
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