STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_021Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.234(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.646 Max cleavage site probability: 0.575 between pos. 27 and 28. (906 aa)    
Predicted Functional Partners:
AMF_093
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.317(Affirmative).
  
   
 0.774
AMF_602
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; Possible type IV secretion system protein (virB6); psort: bacterial inner membrane --- Certainty= 0.722(Affirmative); COG3704 Type IV secretory pathway, VirB6 components.
  
     0.774
AMF_603
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; Possible type IV secretion system protein (virB6); bacterial inner membrane --- Certainty= 0.836(Affirmative) bacterial outer membrane --- Certainty= 0.790(Affirmative); COG3704 Type IV secretory pathway, VirB6 components.
  
     0.774
AMF_604
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; Possible type IV secretion system protein (virB6); psort: bacterial inner membrane --- Certainty= 0.675(Affirmative); COG3704 Type IV secretory pathway, VirB6 components.
  
     0.774
AMF_351
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.013(Affirmative).
  
     0.773
AMF_308
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.274(Affirmative).
 
     0.771
AMF_1035
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.306(Affirmative); COG1238 Uncharacterized membrane protein.
  
     0.767
AMF_849
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.365(Affirmative).
  
     0.765
AMF_476
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.192(Affirmative).
  
     0.764
AMF_118
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.465(Affirmative).
  
     0.759
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.