STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp14Outer membrane protein 14; Member of the msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.153(Affirmative). (398 aa)    
Predicted Functional Partners:
omp1
Outer membrane protein 1; Member of msp2 superfamily; Also known as Ana37; psort: bacterial periplasmic space --- Certainty= 0.861(Affirmative).
      
 0.557
omp5
Outer membrane protein 5; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.401(Affirmative).
      
 0.553
omp6
Outer membrane protein 6; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.794(Affirmative).
      
 0.499
omp13
Outer membrane protein 13; Member of the msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.353(Affirmative).
      
 0.497
omp15
Outer membrane protein 15; Member of the msp2 superfamily; Truncated compared to St. Maries; psort: bacterial inner membrane --- Certainty= 0.100(Affirmative).
      
 0.493
AMF_055
Called by Glimmer 2; Conserved family protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.581(Affirmative); COG1463 Permease component of an ABC-transporter.
       0.451
thiE
Thiamin monophosphate synthase (thiE); Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
      
 0.433
omp12
Outer membrane protein 12; Member of the msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.940(Affirmative).
      
 0.420
purA
Adenylosuccinate synthetase (purA); C-terminal end of the full-length purA; psort: bacterial cytoplasm --- Certainty= 0.325(Affirmative); COG0104 PurA Adenylosuccinate synthase.
      
 0.418
purA-2
Adenylosuccinate synthetase (purA); Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
      
 0.418
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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