STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_085Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.210(Affirmative); COG0739 Membrane proteins related to metalloendopeptidases. (440 aa)    
Predicted Functional Partners:
AMF_739
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial outer membrane --- Certainty= 0.790(Affirmative); COG0739 Membrane proteins related to metalloendopeptidases.
  
   
 0.571
mpp
Mpp; Mitochondrial processing protease; psort: bacterial cytoplasm --- Certainty= 0.244(Affirmative); COG0612 PqqL predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.
       0.561
slt
Psort: bacterial inner membrane --- Certainty= 0.293(Affirmative); COG0741 MltE soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
   
 0.519
pbpA2
Penicillin-binding protein (pbpA2); Psort: bacterial inner membrane --- Certainty= 0.516(Affirmative); COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2.
  
   
 0.518
lepB
Signal peptidase I (lepB); Psort: bacterial inner membrane --- Certainty= 0.147(Affirmative); COG0681 LepB signal peptidase I; Belongs to the peptidase S26 family.
 
    0.444
AMF_086
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.095(Affirmative); COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
       0.404
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.