STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHLarge ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. (44 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16 (rpsP); Psort: bacterial cytoplasm --- Certainty= 0.288(Affirmative); COG0228 RpsP ribosomal protein S16.
   
 
 0.999
rpmF
Large subunit ribosomal protein L32 (rpmF); Psort: bacterial cytoplasm --- Certainty= 0.081(Affirmative); COG0333 RpmF ribosomal protein L32.
   
 
 0.999
rplU
50S ribosomal protein L21 (rplU); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.999
rpmB
50S ribosomal protein L28 (rpmB); Psort: bacterial inner membrane --- Certainty= 0.232(Affirmative); COG0227 RpmB ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.999
rplM
50S ribosomal protein L13 (rplM); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.999
rpsT
30S ribosomal protein S20 (rpsT); Binds directly to 16S ribosomal RNA.
  
 
 0.999
rpmI
Ribosomal protein L35 (rpmI); Psort: bacterial cytoplasm --- Certainty= 0.243(Affirmative); COG0291 RpmI ribosomal protein L35.
  
 
 0.998
rpmG
50S ribosomal protein L33 (rpmG); Psort: bacterial cytoplasm --- Certainty= 0.132(Affirmative); COG0267 RpmG ribosomal protein L33.
   
 
 0.998
rpsU
30s ribosomal protein s21 (rpsU); Psort: bacterial cytoplasm --- Certainty= 0.289(Affirmative); COG0828 RpsU ribosomal protein S21.
   
 
 0.998
rpsO
30S ribosomal protein S15 (rpsO); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.998
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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