STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrYNitrogen regulation protein (ntrY); Psort: bacterial inner membrane --- Certainty= 0.567(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.998 Max cleavage site probability: 0.704 between pos. 32 and 33; COG0347 GlnK nitrogen regulatory protein PII. (695 aa)    
Predicted Functional Partners:
ntrX
Nitrogen assimilation regulatory protein (ntrX); Psort: bacterial cytoplasm --- Certainty= 0.262(Affirmative); COG3852 NtrB signal transduction histidine kinase, nitrogen specific.
 
 0.997
czcR
Transcriptional activator protein (czcR); Psort: bacterial inner membrane --- Certainty= 0.143(Affirmative); COG0745 OmpR response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
    
 
 0.862
rnd
Ribonuclease D (rnd); Psort: bacterial inner membrane --- Certainty= 0.035(Affirmative); COG0349 Rnd ribonuclease D.
       0.816
dhkA
Sensory box histidine kinase/response regulator (dhkA); Psort: bacterial inner membrane --- Certainty= 0.491(Affirmative); COG0642 Signal transduction histidine kinase.
 
 
 0.792
cspA
Cold shock protein (cspA); Psort: bacterial cytoplasm --- Certainty= 0.427(Affirmative); COG1278 CspC cold shock proteins.
  
  
 0.775
dksA
dnaK suppressor protein (dksA); Psort: bacterial cytoplasm --- Certainty= 0.549(Affirmative); COG1734 DksA DnaK suppressor protein.
 
   
 0.700
trkH
Potassium uptake protein trkH (trkH); Psort: bacterial inner membrane --- Certainty= 0.639(Affirmative); COG0168 TrkG Trk-type K+ transport systems, membrane components.
     
 0.609
hlyD
Putative secretion protein hlyD; Psort: bacterial cytoplasm --- Certainty= 0.244(Affirmative); COG0845 AcrA Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.525
AMF_349
Psort: bacterial cytoplasm --- Certainty= 0.331(Affirmative); COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
   
 0.490
AMF_1013
NADH-ubiquinone oxidoreductase, putative; Psort: bacterial inner membrane --- Certainty= 0.102(Affirmative); COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
     0.473
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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