Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMF_237Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.329(Affirmative); COG1253 Hemolysins and related proteins containing CBS domains. (437 aa)    
Predicted Functional Partners:
terC
Membrane protein (TerC); Psort: bacterial inner membrane --- Certainty= 0.607(Affirmative); COG0861 membrane protein TerC, possibly involved in tellurium resistance.
 
      0.673
AMF_238
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.196(Affirmative); COG0762 Predicted integral membrane protein.
       0.548
ftsK
Cell division protein (ftsK); Psort: bacterial inner membrane --- Certainty= 0.291(Affirmative); COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins.
       0.546
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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