Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMF_256Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.164(Affirmative); COG1495 Disulfide bond formation protein DsbB. (172 aa)    
Predicted Functional Partners:
AMF_255
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; Similar to genes annotated as pgpA in E. ruminantium; psort: bacterial inner membrane --- Certainty= 0.455(Affirmative).
       0.827
AMF_083
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.922(Affirmative); COG1651 Protein-disulfide isomerase.
 
 
 0.737
dsbA
Disulfide oxidoreductase; Psort: bacterial inner membrane --- Certainty= 0.533(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.922 Max cleavage site probability: 0.842 between pos. 21 and 22; COG0526 TrxA Thiol-disulfide isomerase and thioredoxins.
  
 
 0.698
ftsQ
Cell division protein (ftsQ); Psort: bacterial cytoplasm --- Certainty= 0.174(Affirmative); COG1589 FtsQ cell division septal protein.
  
     0.630
rpmG
50S ribosomal protein L33 (rpmG); Psort: bacterial cytoplasm --- Certainty= 0.132(Affirmative); COG0267 RpmG ribosomal protein L33.
       0.550
AMF_224
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.559(Affirmative); COG2202 PAS/PAC domain.
  
   
 0.513
trxA
Thioredoxin (trxA); Posrt: bacterial cytoplasm --- Certainty= 0.097(Affirmative); COG0526 TrxA thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
  
 0.504
coq7
Ubiquinone biosynthesis protein (coq7); Psort: bacterial cytoplasm --- Certainty= 0.080(Affirmative); COG2941 CAT5 ubiquinone biosynthesis protein COQ7.
 
     0.489
AMF_1037
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.279(Affirmative).
       0.459
AMF_080
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.300(Affirmative).
  
     0.458
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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