| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMF_966 | recR | AMF_966 | AMF_286 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. | Recombination protein (recR); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.944 |
| recF | recG | AMF_917 | AMF_1012 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | 0.587 |
| recF | recJ | AMF_917 | AMF_856 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | 0.515 |
| recF | recO | AMF_917 | AMF_511 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.709 |
| recF | recR | AMF_917 | AMF_286 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | Recombination protein (recR); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.937 |
| recF | ruvC | AMF_917 | AMF_981 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | Holliday (crossover) junction endodeoxyribonuclease (ruvC); Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.511 |
| recF | topA | AMF_917 | AMF_373 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | DNA topoisomerase I (topA); Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...] | 0.453 |
| recF | uvrD | AMF_917 | AMF_271 | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | DNA helicase II (uvrD); Psort: bacterial inner membrane --- Certainty= 0.132(Affirmative); COG0210 UvrD superfamily I DNA and RNA helicases. | 0.682 |
| recG | recF | AMF_1012 | AMF_917 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.587 |
| recG | recJ | AMF_1012 | AMF_856 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | 0.580 |
| recG | recO | AMF_1012 | AMF_511 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.637 |
| recG | recR | AMF_1012 | AMF_286 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | Recombination protein (recR); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.696 |
| recG | ruvC | AMF_1012 | AMF_981 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | Holliday (crossover) junction endodeoxyribonuclease (ruvC); Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.535 |
| recG | topA | AMF_1012 | AMF_373 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | DNA topoisomerase I (topA); Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...] | 0.623 |
| recG | uvrD | AMF_1012 | AMF_271 | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | DNA helicase II (uvrD); Psort: bacterial inner membrane --- Certainty= 0.132(Affirmative); COG0210 UvrD superfamily I DNA and RNA helicases. | 0.488 |
| recJ | recF | AMF_856 | AMF_917 | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.515 |
| recJ | recG | AMF_856 | AMF_1012 | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | ATP-dependent DNA helicase (recG); Psort: bacterial inner membrane --- Certainty= 0.111(Affirmative); COG1200 RecG RecG-like helicases. | 0.580 |
| recJ | recO | AMF_856 | AMF_511 | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.736 |
| recJ | recR | AMF_856 | AMF_286 | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | Recombination protein (recR); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.672 |
| recJ | ruvC | AMF_856 | AMF_981 | single-stranded-DNA-specific exonuclease (recJ); Psort: bacterial inner membrane --- Certainty= 0.251(Affirmative); COG0608 RecJ single-stranded DNA-specific exonuclease. | Holliday (crossover) junction endodeoxyribonuclease (ruvC); Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.627 |
