STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmbApmbA protein (pmbA); Psort: bacterial cytoplasm --- Certainty= 0.121(Affirmative); COG0312 TldD predicted Zn-dependent proteases and their inactivated homologs. (444 aa)    
Predicted Functional Partners:
tldD
tldD protein; Psort: bacterial cytoplasm --- Certainty= 0.333(Affirmative); COG0312 TldD predicted Zn-dependent proteases and their inactivated homologs.
 
 
0.930
atpG
ATP synthase gamma chain (atpG); Psort: bacterial cytoplasm --- Certainty= 0.154(Affirmative); COG0224 AtpG F0F1-type ATP synthase gamma subunit.
       0.816
folE
GTP cyclohydrolase I (folE); Psort: bacterial inner membrane --- Certainty= 0.174(Affirmative); COG0302 FolE GTP cyclohydrolase I; Belongs to the GTP cyclohydrolase I family.
       0.799
trxB2
Thioredoxin reductase (trxB2); Psort: bacterial inner membrane --- Certainty= 0.170(Affirmative); COG0492 TrxB thioredoxin reductase.
  
    0.566
nuoD
NADH dehydrogenase chain D (nuoD); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
       0.415
nuoE
NADH dehydrogenase I chain E (nuoE); Psort: bacterial cytoplasm --- Certainty= 0.446(Affirmative); COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit.
       0.415
dnaQ
DNA polymerase III, epsilon chain (dnaQ); DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.415
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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