Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMF_474 | AMF_505 | AMF_474 | AMF_505 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | 0.551 |
| AMF_474 | cycM | AMF_474 | AMF_142 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | 0.521 |
| AMF_474 | nuoJ | AMF_474 | AMF_553 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.451 |
| AMF_505 | AMF_474 | AMF_505 | AMF_474 | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | 0.551 |
| AMF_505 | cycM | AMF_505 | AMF_142 | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | 0.554 |
| AMF_505 | nuoJ | AMF_505 | AMF_553 | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.550 |
| cycM | AMF_474 | AMF_142 | AMF_474 | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | 0.521 |
| cycM | AMF_505 | AMF_142 | AMF_505 | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | 0.554 |
| cycM | nuoJ | AMF_142 | AMF_553 | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.495 |
| nuoJ | AMF_474 | AMF_553 | AMF_474 | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.307(Affirmative). | 0.451 |
| nuoJ | AMF_505 | AMF_553 | AMF_505 | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Hypothetical protein called by Glimmer 2; Significant similarity to AMF_209, AMF_571, AMF_735, and AMF_790 ; psort: bacterial inner membrane --- Certainty= 0.539(Affirmative). | 0.550 |
| nuoJ | cycM | AMF_553 | AMF_142 | NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Cytochrome C (cycM); Psort: bacterial inner membrane --- Certainty= 0.412(Affirmative); COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit. | 0.495 |