STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_530Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.172(Affirmative). (3493 aa)    
Predicted Functional Partners:
AMF_1037
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.279(Affirmative).
      
 0.493
AMF_401
Hypothetical protein called by Glimmer 2; Some similarity to AMF_408 and to AMF_395; psort: bacterial inner membrane --- Certainty= 0.688(Affirmative).
      
 0.493
AMF_879
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.206(Affirmative).
      
 0.493
AMF_197
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.102(Affirmative).
      
 0.465
AMF_264
Hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.920(Affirmative).
      
 0.465
AMF_269
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.293(Affirmative).
      
 0.465
AMF_703
Hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.655(Affirmative).
      
 0.465
lysC
Aspartokinase (lysC); Psort: bacterial inner membrane --- Certainty= 0.183(Affirmative); COG0527 LysC aspartokinases; Belongs to the aspartokinase family.
      
 0.463
AMF_051
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial outer membrane --- Certainty= 0.530(Affirmative) bacterial periplasmic space --- Certainty= 0.164(Affirmative).
      
 0.459
AMF_547
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.217(Affirmative).
      
 0.459
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.