STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB6VirB6; Psort: bacterial inner membrane --- Certainty= 0.626(Affirmative); COG3704 VirB6 type IV secretory pathway, VirB6 components. (893 aa)    
Predicted Functional Partners:
virB4
VirB4; Psort: bacterial membrane --- Certainty= 0.588(Affirmative); COG3451 VirB4 type IV secretory pathway, VirB4 components.
  
  
 0.990
virB3
VirB3; Psort: bacterial inner membrane --- Certainty= 0.213(Affirmative); COG3702 VirB3 type IV secretory pathway, VirB3 components.
  
  
 0.984
virB8
VirB8 protein (virB8); Psort: bacterial inner membrane --- Certainty= 0.576(Affirmative); COG3736 VirB8 type IV secretion system, component VirB8.
  
  
 0.968
virB4-2
VirB4 protein; Psort: bacterial cytoplasm --- Certainty= 0.571(Affirmative); COG3451 VirB4 type IV secretory pathway, VirB4 components.
  
  
 0.949
virB9
VirB9 protein (virB9); Psort: bacterial periplasmic space --- Certainty= 0.742(Affirmative); COG3504 VirB9 type IV secretory pathway, VirB9 components.
  
 
 0.947
virB10
VirB10 protein (virB10); Psort: bacterial inner membrane --- Certainty= 0.334(Affirmative); COG2948 VirB10 type IV secretory pathway, VirB10 components.
  
  
 0.926
virB11
VirB11 protein (virB11); Part of the Type IV secretion system. Belongs to the GSP E family.
  
  
 0.919
sodB
Fe superoxide dismutase (sodB); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.885
virD4
VirD4 protein (virD4); Psort: bacterial inner membrane --- Certainty= 0.355(Affirmative); COG3505 VirD4 type IV secretory pathway, VirD4 components.
     
 0.838
trbG
Conjugal transfer protein trbG precursor (trbG); Psort: bacterial outer membrane --- Certainty= 0.941(Affirmative); COG3504 VirB9 Type IV secretory pathway, VirB9 components.
  
 
 0.828
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.