Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMF_667 | alp3 | AMF_667 | AMF_664 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | 0.476 |
| AMF_667 | rnpA | AMF_667 | AMF_665 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.779 |
| AMF_667 | rpmH | AMF_667 | AMF_1048 | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | 0.769 |
| aaap-2 | alp3 | AMF_663 | AMF_664 | Appendage-associated protein; Psort: bacterial cytoplasm --- Certainty= 0.255(Affirmative). | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | 0.552 |
| alp3 | AMF_667 | AMF_664 | AMF_667 | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | 0.476 |
| alp3 | aaap-2 | AMF_664 | AMF_663 | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | Appendage-associated protein; Psort: bacterial cytoplasm --- Certainty= 0.255(Affirmative). | 0.552 |
| alp3 | rnpA | AMF_664 | AMF_665 | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.491 |
| alp3 | rpmH | AMF_664 | AMF_1048 | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | 0.491 |
| rnpA | AMF_667 | AMF_665 | AMF_667 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | 0.779 |
| rnpA | alp3 | AMF_665 | AMF_664 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | 0.491 |
| rnpA | rpmH | AMF_665 | AMF_1048 | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | 0.994 |
| rpmH | AMF_667 | AMF_1048 | AMF_667 | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.561(Affirmative); COG1115 Na+/alanine symporter. | 0.769 |
| rpmH | alp3 | AMF_1048 | AMF_664 | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | Appendage-associated protein-like protein 3; Psort: bacterial cytoplasm --- Certainty= 0.340(Affirmative). | 0.491 |
| rpmH | rnpA | AMF_1048 | AMF_665 | Large ribosome subunit L34 (rpmH); Psort: bacterial cytoplasm --- Certainty= 0.474(Affirmative); COG0230 RpmH ribosomal protein L34. | Conserved hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.994 |