STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_704Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.292(Affirmative). (139 aa)    
Predicted Functional Partners:
AMF_703
Hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.655(Affirmative).
       0.816
ftsZ
Cell division protein (ftsZ); Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.688
AMF_118
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.465(Affirmative).
  
    0.598
ftsA
Cell division protein FTSA (ftsA); Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
    
 
 0.565
ubiH
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (ubiH); Psort: bacterial inner membrane --- Certainty= 0.238(Affirmative); COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
     
 0.534
rpsA
30S ribosomal protein S1 (rpsA); Psort: bacterial cytoplasm --- Certainty= 0.280(Affirmative); COG0539 RpsA ribosomal protein S1.
       0.529
AMF_160
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.701(Affirmative) bacterial outer membrane --- Certainty= 0.317(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.741 Max cleavage site probability: 0.700 between pos. 27 and 28.
      
 0.472
AMF_181
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.727(Affirmative).
      
 0.472
sppA
Protease IV (sppA); Psort: bacterial inner membrane --- Certainty= 0.446(Affirmative); COG0616 SppA periplasmic serine proteases (ClpP class).
       0.449
trmH
Putative tRNA/rRNA methyltransferase TrmH; Psort: bacterial cytoplasm --- Certainty= 0.108(Affirmative); COG0566 SpoU rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.414
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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