STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_781Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.164(Affirmative). (197 aa)    
Predicted Functional Partners:
tolC
Outer membrane protein (tolC); Psort: bacterial inner membrane --- Certainty= 0.295(Affirmative); COG1538 TolC outer membrane protein.
       0.772
parB
Chromosome partitioning protein (parB); Psort: bacterial cytoplasm --- Certainty= 0.231(Affirmative); COG1475 Spo0J predicted transcriptional regulators; Belongs to the ParB family.
    
 
 0.724
virB8
VirB8 protein (virB8); Psort: bacterial inner membrane --- Certainty= 0.576(Affirmative); COG3736 VirB8 type IV secretion system, component VirB8.
  
     0.546
rplM
50S ribosomal protein L13 (rplM); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.531
rpsI
30S ribosomal protein S9 (rpsI); Psort: bacterial cytoplasm --- Certainty= 0.329(Affirmative); COG0103 RpsI ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.530
AMF_1051
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.235(Affirmative).
       0.527
virB9
VirB9 protein (virB9); Psort: bacterial periplasmic space --- Certainty= 0.742(Affirmative); COG3504 VirB9 type IV secretory pathway, VirB9 components.
  
     0.477
virB3
VirB3; Psort: bacterial inner membrane --- Certainty= 0.213(Affirmative); COG3702 VirB3 type IV secretory pathway, VirB3 components.
  
     0.461
AMF_224
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.559(Affirmative); COG2202 PAS/PAC domain.
  
 
   0.426
ftsQ
Cell division protein (ftsQ); Psort: bacterial cytoplasm --- Certainty= 0.174(Affirmative); COG1589 FtsQ cell division septal protein.
  
     0.420
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.