STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAAconitate hydratase (acnA); Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (901 aa)    
Predicted Functional Partners:
gltA
Citrate synthase (gltA); Psort: bacterial cytoplasm --- Certainty= 0.043(Affirmative); COG0372 GltA citrate synthase.
  
 0.998
icd
Isocitrate dehydrogenase (icd); Psort: bacterial cytoplasm --- Certainty= 0.104(Affirmative); COG0538 Icd isocitrate dehydrogenases.
  
 0.981
sodB
Fe superoxide dismutase (sodB); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.933
fadB
3-hydroxyacyl-COA dehydrogenase bO272.3 (fadB); Psort: bacterial inner membrane --- Certainty= 0.005(Affirmative); COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.928
rplS
50S ribosomal subunit L19 (rplS); This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.904
rpmB
50S ribosomal protein L28 (rpmB); Psort: bacterial inner membrane --- Certainty= 0.232(Affirmative); COG0227 RpmB ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.891
rpmF
Large subunit ribosomal protein L32 (rpmF); Psort: bacterial cytoplasm --- Certainty= 0.081(Affirmative); COG0333 RpmF ribosomal protein L32.
   
   0.890
rpsP
30S ribosomal protein S16 (rpsP); Psort: bacterial cytoplasm --- Certainty= 0.288(Affirmative); COG0228 RpsP ribosomal protein S16.
   
   0.884
rpmJ
Large subunit ribosomal protein L36 (rpmJ); Psort: bacterial cytoplasm --- Certainty= 0.021(Affirmative); COG0257 RpmJ ribosomal protein L36.
   
 
 0.883
rpmA
50S ribosomal protein L27 (rpmA); Psort: bacterial cytoplasm --- Certainty= 0.450(Affirmative); COG0211 RpmA ribosomal protein L27.
   
   0.883
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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