STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msp3Major surface protein 3 (MSP3); Member of msp2 superfamily; psort: bacterial periplasmic space --- Certainty= 0.930(Affirmative). (867 aa)    
Predicted Functional Partners:
msp5
Major surface protein 5 (MSP5); Psort: bacterial inner membrane --- Certainty= 0.391(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.837 Max cleavage site probability: 0.403 between pos. 26 and 27.
      
 0.672
AMF_805
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.846(Affirmative); COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
   
   0.642
omp1
Outer membrane protein 1; Member of msp2 superfamily; Also known as Ana37; psort: bacterial periplasmic space --- Certainty= 0.861(Affirmative).
      
 0.566
msp1a
Major surface protein 1a (MSP1A); Member of msp1 superfamily; psort: bacterial inner membrane --- Certainty= 0.567(Affirmative).
      
 0.552
AMF_800
ORF Y; Psort: bacterial inner membrane --- Certainty= 0.213(Affirmative).
     
 0.530
msp4
Major surface protein 4 (msp4); Member of msp2 superfamily; psort: bacterial cytoplasm --- Certainty= 0.211(Affirmative) signalP: Prediction: Signal peptide Signal peptide probability: 1.000 Max cleavage site probability: 0.933 between pos. 29 and 30.
      
0.503
AMF_801
ORF X; Psort: bacterial inner membrane --- Certainty= 0.414(Affirmative).
       0.492
omp6
Outer membrane protein 6; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.794(Affirmative).
      
 0.479
omp3
Outer membrane protein 3; Member of msp2 superfamily; Significant sequence similarity to AMF_56 (highest in C-terminal end); psort: bacterial cytoplasm --- Certainty= 0.225(Affirmative).
      
 0.474
AMF_829
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.944(Affirmative).
    
   0.468
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.