STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacASerine-type D-Ala-D-Ala carboxypeptidase (dacA); Psort: bacterial periplasmic space --- Certainty= 0.623(Affirmative); COG1686 DacC D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (380 aa)    
Predicted Functional Partners:
panC
Pantoate-beta-alanine ligase (panC); Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
       0.549
metS
methionyl-tRNA synthetase (metS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
  
 0.522
AMF_822
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.030(Affirmative); COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
       0.502
nuoJ
NADH dehydrogenase I chain J (nuoJ); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
   
 0.496
AMF_1026
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.285(Affirmative).
      
 0.493
lysC
Aspartokinase (lysC); Psort: bacterial inner membrane --- Certainty= 0.183(Affirmative); COG0527 LysC aspartokinases; Belongs to the aspartokinase family.
   
  
 0.460
AMF_197
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.102(Affirmative).
      
 0.451
AMF_264
Hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.920(Affirmative).
      
 0.451
AMF_269
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.293(Affirmative).
      
 0.451
AMF_703
Hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.655(Affirmative).
      
 0.451
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.