STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sltPsort: bacterial inner membrane --- Certainty= 0.293(Affirmative); COG0741 MltE soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (674 aa)    
Predicted Functional Partners:
AMF_834
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.592(Affirmative); COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1.
       0.682
pbpA2
Penicillin-binding protein (pbpA2); Psort: bacterial inner membrane --- Certainty= 0.516(Affirmative); COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.602
AMF_739
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial outer membrane --- Certainty= 0.790(Affirmative); COG0739 Membrane proteins related to metalloendopeptidases.
  
   
 0.600
AMF_085
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.210(Affirmative); COG0739 Membrane proteins related to metalloendopeptidases.
  
   
 0.547
pbpA1
Penicillin-binding protein (pbpA1); Psort: bacterial inner membrane --- Certainty= 0.348(Affirmative); COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.525
topA
DNA topoisomerase I (topA); Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing D [...]
  
  
 0.504
dhkA
Sensory box histidine kinase/response regulator (dhkA); Psort: bacterial inner membrane --- Certainty= 0.491(Affirmative); COG0642 Signal transduction histidine kinase.
   
  
 0.453
mgtE
Magnesium transporter (mgtE); Acts as a magnesium transporter.
      
 0.418
mreC
Rod shape determining protein (mreC); Psort: bacterial inner membrane --- Certainty= 0.206(Affirmative); COG1792 MreC rod shape-determining protein.
 
   
 0.407
mreB
Rod shape-determining protein (mreB); Psort: bacterial inner membrane --- Certainty= 0.270(Affirmative); COG1077 MreB HSP70 class molecular chaperones involved in cell morphogenesis.
  
 
 
 0.402
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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