STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opag2Msp2 operon associated protein 2; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.548(Affirmative). (303 aa)    
Predicted Functional Partners:
opag1
Msp2 operon associated protein 1; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.921(Affirmative).
     
 0.850
opag3
Msp2 operon associated protein 3; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.264(Affirmative).
     
0.806
msp2
Major surface protein 2 (MSP2); Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.934(Affirmative).
     
0.782
omp1
Outer membrane protein 1; Member of msp2 superfamily; Also known as Ana37; psort: bacterial periplasmic space --- Certainty= 0.861(Affirmative).
     
0.557
thdF
Thiophene and furan oxidation protein (thdF); Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
      
 0.472
ccmA
Heme exporter protein (ccmA); Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
      
 0.472
AMF_237
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.329(Affirmative); COG1253 Hemolysins and related proteins containing CBS domains.
      
 0.472
def-2
N-formylmethionylaminoacyl-tRNA deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      
 0.472
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.