STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msp2Major surface protein 2 (MSP2); Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.934(Affirmative). (415 aa)    
Predicted Functional Partners:
opag1
Msp2 operon associated protein 1; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.921(Affirmative).
     
 0.855
opag3
Msp2 operon associated protein 3; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.264(Affirmative).
     
 0.827
opag2
Msp2 operon associated protein 2; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.548(Affirmative).
     
0.782
msp5
Major surface protein 5 (MSP5); Psort: bacterial inner membrane --- Certainty= 0.391(Affirmative); signalP: Prediction: Signal peptide Signal peptide probability: 0.837 Max cleavage site probability: 0.403 between pos. 26 and 27.
      
 0.723
groEL
60 kD chaperonin (groEL); Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
      
 0.711
gltA
Citrate synthase (gltA); Psort: bacterial cytoplasm --- Certainty= 0.043(Affirmative); COG0372 GltA citrate synthase.
   
  
 0.706
msp1a
Major surface protein 1a (MSP1A); Member of msp1 superfamily; psort: bacterial inner membrane --- Certainty= 0.567(Affirmative).
      
 0.690
omp1
Outer membrane protein 1; Member of msp2 superfamily; Also known as Ana37; psort: bacterial periplasmic space --- Certainty= 0.861(Affirmative).
     
0.580
rpoB
RNA polymerase beta subunit (rpoB); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.566
dnaK
DNAK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
      
 0.549
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.