STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF_877Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.191(Affirmative). (82 aa)    
Predicted Functional Partners:
omp3
Outer membrane protein 3; Member of msp2 superfamily; Significant sequence similarity to AMF_56 (highest in C-terminal end); psort: bacterial cytoplasm --- Certainty= 0.225(Affirmative).
       0.572
omp2
Outer membrane protein 2; Member of msp2 superfamily; psort: bacterial cytoplasm --- Certainty= 0.481(Affirmative).
       0.423
omp4
Outer membrane protein 4; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.790(Affirmative).
       0.415
AMF_879
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.206(Affirmative).
       0.415
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.