STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp4Outer membrane protein 4; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.790(Affirmative). (405 aa)    
Predicted Functional Partners:
AMF_879
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.206(Affirmative).
     
 0.834
omp5
Outer membrane protein 5; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.401(Affirmative).
     
0.583
omp15
Outer membrane protein 15; Member of the msp2 superfamily; Truncated compared to St. Maries; psort: bacterial inner membrane --- Certainty= 0.100(Affirmative).
      
 0.499
omp10
Outer membrane protein 10; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.281(Affirmative).
      
 0.491
opag1
Msp2 operon associated protein 1; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.921(Affirmative).
      
 0.416
AMF_877
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.191(Affirmative).
       0.415
msp1B-1
Major surface protein 1B-1; Member of msp1 superfamily; psort: bacterial inner membrane --- Certainty= 0.227(Affirmative).
      
 0.414
opag3
Msp2 operon associated protein 3; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.264(Affirmative).
      
 0.412
AMF_1026
Hypothetical protein called by Glimmer 2; psort: bacterial cytoplasm --- Certainty= 0.285(Affirmative).
      
 0.408
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.