STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp5Outer membrane protein 5; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.401(Affirmative). (379 aa)    
Predicted Functional Partners:
omp4
Outer membrane protein 4; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.790(Affirmative).
     
0.583
opag3
Msp2 operon associated protein 3; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.264(Affirmative).
      
 0.555
omp14
Outer membrane protein 14; Member of the msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.153(Affirmative).
      
 0.553
AMF_879
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.206(Affirmative).
       0.504
omp12
Outer membrane protein 12; Member of the msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.940(Affirmative).
      
 0.499
omp13
Outer membrane protein 13; Member of the msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.353(Affirmative).
      
 0.497
AMF_829
Called by Glimmer 2; Conserved hypothetical protein called by Glimmer 2; psort: bacterial periplasmic space --- Certainty= 0.944(Affirmative).
    
   0.468
omp10
Outer membrane protein 10; Member of msp2 superfamily; psort: bacterial inner membrane --- Certainty= 0.281(Affirmative).
      
 0.451
opag1
Msp2 operon associated protein 1; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.921(Affirmative).
      
 0.435
rplY
50S ribosomal protein L25 (rplY); This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.429
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.