STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argFOrnithine carbamoyltransferase (argF); Psort: bacterial cytoplasm --- Certainty= 0.023(Affirmative); COG0078 ArgF ornithine carbamoyltransferase. (302 aa)    
Predicted Functional Partners:
agk
Acetylglutamate kinase (agk); Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.
 
  
 0.978
carB
Carbamyl-phosphate synthase, large subunit (carB); Psort: bacterial inner membrane --- Certainty= 0.157(Affirmative); COG0458 CarB carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family.
  
 
 0.960
carA
Carbamoyl-phosphate synthase, small chain (carA); Psort: bacterial inner membrane --- Certainty= 0.210(Affirmative); COG0505 CarA carbamoylphosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.949
argD
Acetylornithine aminotransferase (argD); Psort: bacterial cytoplasm --- Certainty= 0.069(Affirmative); COG0160 ArgD PLP-dependent aminotransferases.
 
  
 0.936
pyrB
Aspartate carbamoyltransferase pyrB (pyrB); Psort: bacterial inner membrane --- Certainty= 0.119(Affirmative); COG0540 PyrB aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
    
 0.845
recF
RECF protein (recF); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
       0.762
AMF_915
Hypothetical protein called by Glimmer 2; psort: bacterial inner membrane --- Certainty= 0.711(Affirmative).
       0.701
ribD
Riboflavin biosynthesis protein (ribD); Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.615
pheT
phenylalanyl-tRNA synthetase beta chain (pheT); Psort: bacterial inner membrane --- Certainty= 0.193(Affirmative); COG0072 PheT phenylalanyl-tRNA synthetase beta subunit.
     
 0.601
dapE
Succinyl-diaminopimelate desuccinylase (dapE); Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
 
  
 0.567
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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