STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp11Outer membrane protein 11; Member of the msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.785(Affirmative). (331 aa)    
Predicted Functional Partners:
omp12
Outer membrane protein 12; Member of the msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.940(Affirmative).
     
 0.711
rplY
50S ribosomal protein L25 (rplY); This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
 
 0.624
tdpX1
Thioredoxin peroxidase 1 (tdpX1); Psort: bacterial cytoplasm --- Certainty= 0.065(Affirmative); COG0450 AhpC peroxiredoxin.
   
  
 0.579
omp6
Outer membrane protein 6; Member of msp2 superfamily; psort: bacterial outer membrane --- Certainty= 0.794(Affirmative).
      
 0.554
rpsB
30S ribosomal protein S2 (rpsB); Psort: bacterial inner membrane --- Certainty= 0.104(Affirmative); COG0052 RpsB ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
    
 
 0.552
sdhB
Succinate dehydrogenase iron-sulfur protein (sdhB/frdB); Psort: bacterial cytoplasm --- Certainty= 0.392(Affirmative); COG0479 FrdB succinate dehydrogenase/fumarate reductase Fe-S protein.
      
 0.551
msp1B-2
Major surface protein 1B-2; Member of msp1b gene family, full length gene copy 2; member of msp1 superfamily; psort: bacterial inner membrane --- Certainty= 0.285(Affirmative).
      
 0.550
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Psort: bacterial inner membrane --- Certainty= 0.106(Affirmative); COG0043 UbiD 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; Belongs to the UbiD family.
       0.520
folD
Methylenetetrahydrofolate dehydrogenase (folD); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
      
 0.499
msp1B-1
Major surface protein 1B-1; Member of msp1 superfamily; psort: bacterial inner membrane --- Certainty= 0.227(Affirmative).
      
 0.497
Your Current Organism:
Anaplasma marginale
NCBI taxonomy Id: 320483
Other names: A. marginale str. Florida, Anaplasma marginale str. Florida, Anaplasma marginale strain Florida
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