STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB-2D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Similar to gene slr0646 of Synechocystis sp. PCC 6803. (479 aa)    
Predicted Functional Partners:
dacB
D-Ala-D-Ala carboxypeptidase 3 (S13) family (penicillin binding protein 4); Similar to sll1369 of Synechocystis sp. PCC 6803.
  
  
 
0.929
mltA
Membrane-bound lytic transglycosylase A; Similar to sll0016 of Synechocystis sp. PCC 6803.
  
   
 0.864
ACA98601.1
Uncharacterized protein, microcin C7 resistance MccF like protein; Similar to slr1534 of Synechocystis sp. PCC 6803.
 
  
 0.779
ACA98819.1
Conserved hypothetical protein; Similar to ssr2016 of Synechocystis sp. PCC 6803.
       0.596
ACA99384.1
Ankyrin repeat protein; Similar to all2748 of Nostoc sp. PCC 7120.
   
   0.580
mscS
Mechanosensitive ion channel family protein; Similar to all1413 in Nostoc sp. PCC 7120.
     
 0.575
ACA98821.1
Methyltransferase, UbiE/COQ5 family protein; Similar to all0772 of Nostoc sp. PCC 7120.
       0.540
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.414
amt
Ammonium transporter, putative; Similar to sll0537 in Synechocystis sp. PCC 6803.
      
 0.405
ACB00189.1
Ammonium/methylammonium permease; Similar to sll0108 of Synechocystis sp. PCC 6803.
      
 0.405
Your Current Organism:
Synechococcus sp. PCC7002
NCBI taxonomy Id: 32049
Other names: Agmenellum quadruplicatum, Agmenellum quadruplicatum PR-6, S. sp. PCC 7002, Synechococcus PCC7002 PR-6, Synechococcus sp. (ATCC 27264), Synechococcus sp. (PCC 7002), Synechococcus sp. (strain PCC 7002), Synechococcus sp. PCC 7002
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