Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAK22889.1 | CAK23007.1 | SynWH7803_0463 | SynWH7803_0581 | Uncharacterized conserved membrane protein. | Conserved hypothetical protein. | 0.732 |
CAK22889.1 | recO | SynWH7803_0463 | SynWH7803_0576 | Uncharacterized conserved membrane protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.711 |
CAK23000.1 | CAK23001.1 | SynWH7803_0574 | SynWH7803_0575 | Glycosyltransferase of family GT4. | Permeases of the major facilitator superfamily. | 0.780 |
CAK23000.1 | CAK23007.1 | SynWH7803_0574 | SynWH7803_0581 | Glycosyltransferase of family GT4. | Conserved hypothetical protein. | 0.680 |
CAK23000.1 | deoC | SynWH7803_0574 | SynWH7803_0577 | Glycosyltransferase of family GT4. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.749 |
CAK23000.1 | lrtA | SynWH7803_0574 | SynWH7803_0578 | Glycosyltransferase of family GT4. | Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.649 |
CAK23000.1 | recO | SynWH7803_0574 | SynWH7803_0576 | Glycosyltransferase of family GT4. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.750 |
CAK23001.1 | CAK23000.1 | SynWH7803_0575 | SynWH7803_0574 | Permeases of the major facilitator superfamily. | Glycosyltransferase of family GT4. | 0.780 |
CAK23001.1 | CAK23007.1 | SynWH7803_0575 | SynWH7803_0581 | Permeases of the major facilitator superfamily. | Conserved hypothetical protein. | 0.567 |
CAK23001.1 | deoC | SynWH7803_0575 | SynWH7803_0577 | Permeases of the major facilitator superfamily. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.813 |
CAK23001.1 | lrtA | SynWH7803_0575 | SynWH7803_0578 | Permeases of the major facilitator superfamily. | Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.679 |
CAK23001.1 | recO | SynWH7803_0575 | SynWH7803_0576 | Permeases of the major facilitator superfamily. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.817 |
CAK23007.1 | CAK22889.1 | SynWH7803_0581 | SynWH7803_0463 | Conserved hypothetical protein. | Uncharacterized conserved membrane protein. | 0.732 |
CAK23007.1 | CAK23000.1 | SynWH7803_0581 | SynWH7803_0574 | Conserved hypothetical protein. | Glycosyltransferase of family GT4. | 0.680 |
CAK23007.1 | CAK23001.1 | SynWH7803_0581 | SynWH7803_0575 | Conserved hypothetical protein. | Permeases of the major facilitator superfamily. | 0.567 |
CAK23007.1 | deoC | SynWH7803_0581 | SynWH7803_0577 | Conserved hypothetical protein. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.420 |
CAK23007.1 | lrtA | SynWH7803_0581 | SynWH7803_0578 | Conserved hypothetical protein. | Light repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.458 |
CAK23007.1 | recO | SynWH7803_0581 | SynWH7803_0576 | Conserved hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.704 |
deoC | CAK23000.1 | SynWH7803_0577 | SynWH7803_0574 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Glycosyltransferase of family GT4. | 0.749 |
deoC | CAK23001.1 | SynWH7803_0577 | SynWH7803_0575 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Permeases of the major facilitator superfamily. | 0.813 |
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