Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKN59930.1Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
AKN59973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.981
AKN62157.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.954
atpD
ATP F0F1 synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.944
AKN60831.1
Rubsico expression protein CbbX; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.926
AKN60970.1
AAA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.926
AKN60004.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.923
AKN60957.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.907
AKN60322.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.903
AKN61100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
AKN60100.1
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.891
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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