STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN59930.1Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
AKN60004.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.977
AKN59973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.974
AKN62157.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.969
AKN60439.1
Molecular chaperone Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.956
AKN62179.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.899
AKN61449.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.898
AKN62403.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.898
AKN60831.1
Rubsico expression protein CbbX; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.882
AKN60970.1
AAA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.882
AKN62234.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.865
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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