STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcSHypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (155 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.796
cpcT
Chorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
     
 0.769
rpcE
Glycosyl transferase family 2; An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II beta chain.
     
 0.738
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.676
cpcT-2
Chorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
     
 0.655
AKN62044.1
Alpha-acetolactate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-acetolactate decarboxylase family.
       0.592
cpeY
Hypothetical protein; Involved in the biosynthesis of bilin.
     
 0.578
rpcA
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
     
 0.466
AKN59937.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.410
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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