STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKN60247.1Carotene isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)    
Predicted Functional Partners:
AKN62342.1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.976
AKN61336.1
Phytoene desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.956
AKN61335.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.915
AKN62084.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.886
AKN60749.1
Carotene isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.839
gid
tRNA (uracil-5-)-methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.728
AKN62348.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.723
AKN61765.1
Magnesium chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
 
 0.701
AKN60354.1
Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.690
AKN59881.1
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.683
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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