Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKN60306.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)    
Predicted Functional Partners:
AKN60307.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.942
AKN60305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.890
AKN60096.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.876
AKN62381.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.864
AKN61516.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.770
AKN60308.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.724
AKN60347.1
Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.689
AKN62419.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.
    
  0.662
AKN61319.1
Cobalt ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.634
AKN61002.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.572
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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