STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN60357.1GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)    
Predicted Functional Partners:
AKN60358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.765
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
    0.757
AKN61876.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.717
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
   
    0.669
AKN60360.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.666
AKN60361.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
AKN60356.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.652
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
   
  
 0.643
AKN60359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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