STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN60547.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiD family. (519 aa)    
Predicted Functional Partners:
ubiX
Amino acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
 
 0.989
ubiA
Prenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family.
 
  
 0.896
AKN60315.1
2-octaprenyl-6-methoxyphenol 4-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.823
AKN59881.1
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.611
AKN61751.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.587
comB
2-phosphosulfolactate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ComB family.
       0.580
menG
Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of 2-phytyl- 1,4-beta-naphthoquinol to phylloquinol.
 
 
  
 0.570
AKN62084.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.515
AKN61216.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.515
AKN60549.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.497
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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