STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN60550.1Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)    
Predicted Functional Partners:
AKN60751.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.876
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.862
AKN61301.1
Glycosyl hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.858
AKN60549.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.789
AKN62201.1
Peptidase S66; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.781
AKN62276.1
Peptidase S66; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.781
AKN62143.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.774
AKN60012.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.772
AKN61878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.713
AKN60552.1
Prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
       0.672
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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