STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN60847.1Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
AKN60842.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.951
AKN60841.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.943
AKN60850.1
Microcompartment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.903
rbcL
Ribulose 1,5-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.851
AKN60845.1
Ribulose 1,5-bisphosphate carboxylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.806
AKN60843.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.673
AKN60844.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.641
AKN60848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.541
AKN62248.1
NAD(P)H-quinone oxidoreductase subunit D4; Catalyzes the transfer of electrons from NADH to ubiquinone; NdhD4 is possibly involved in a constitutive CO(2)-uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.485
AKN60839.1
NAD(P)H-quinone oxidoreductase subunit F; Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.480
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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