Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKN61121.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)    
Predicted Functional Partners:
AKN62302.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AKN61120.1
Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
AKN62301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
AKN62303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
atpG
ATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
       0.490
atpA
ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
       0.483
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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