Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKN61129.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
AKN61765.1
Magnesium chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
   
 0.930
AKN62305.1
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
 
     0.896
AKN62304.1
ATP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
rpcB
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
  
   
 0.787
AKN60398.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.777
AKN61130.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.774
rpcA
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
  
   
 0.774
AKN61088.1
Phycobilisome linker polypeptide; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
     0.772
AKN61131.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.772
AKN61132.1
Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
     0.772
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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