STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKN61419.1General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (732 aa)    
Predicted Functional Partners:
AKN61805.1
Organic solvent tolerance protein OstA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.770
AKN60202.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.758
AKN62343.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.729
AKN62031.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.720
AKN61008.1
ADP-heptose--LPS heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
AKN62156.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.714
AKN60183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
AKN60563.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.694
AKN61283.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.694
AKN60954.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.679
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.