Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
cpcTChorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (196 aa)    
Predicted Functional Partners:
rpcE
Glycosyl transferase family 2; An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II beta chain.
 
  
 0.981
rpcF
Glycosyl transferase family 2; An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II alpha chain.
 
  
 0.978
rpcB
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
  
 0.975
rpcA
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
  
 0.956
cpcS-2
Chorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
  
 0.943
cpcS-3
Chorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
  
 0.921
cpeA
Bleomycin hydrolase; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
  
 0.908
AKN61131.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.889
cpcS-4
Phycoerythrobilin lyase; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
  
 0.882
AKN62305.1
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
  
 0.871
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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