STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpcAPhycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. (162 aa)    
Predicted Functional Partners:
rpcB
Phycocyanin; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
 
0.999
AKN62326.1
Phycobilisome rod-core linker polypeptide CpcG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
 
 0.998
AKN61130.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
0.994
rpcE
Glycosyl transferase family 2; An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II beta chain.
 
  
 0.994
AKN62305.1
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
 
 0.992
rpcF
Glycosyl transferase family 2; An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II alpha chain.
 
  
 0.989
AKN61988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
 
 0.989
AKN61132.1
Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.985
AKN60398.1
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.984
cpeB
Bleomycin hydrolase; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
 
 
 0.974
Your Current Organism:
Synechococcus sp. WH 8020
NCBI taxonomy Id: 32052
Other names: S. sp. WH 8020, Synechococcus WH8020, Synechococcus sp. (strain WH8020), Synechococcus sp. WH8020
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