STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF56983.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_0027 xylose isomerase domain-containing protein. (288 aa)    
Predicted Functional Partners:
EEF59396.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7764 oxidoreductase domain-containing protein.
  
    0.782
EEF56981.1
Hypothetical protein.
       0.773
EEF56982.1
Hypothetical protein.
       0.773
EEF56984.1
Hypothetical protein.
       0.773
EEF56986.1
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain-containing protein.
 
    0.727
EEF57540.1
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ote:Oter_3022 chorismate mutase.
  
  
  0.719
EEF58420.1
KEGG: sus:Acid_6537 hypothetical protein.
  
     0.715
EEF59385.1
Hypothetical protein; KEGG: bca:BCE_0859 alkaline ceramidase domain-containing protein.
  
     0.712
EEF62975.1
PFAM: oxidoreductase domain protein; KEGG: sco:SCO0735 oxidoreductase.
  
    0.711
EEF62049.1
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: gur:Gura_2970 putative PTS IIA-like nitrogen-regulatory protein PtsN.
    
  0.705
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.