STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF57056.1PFAM: pseudouridine synthase; KEGG: ote:Oter_3808 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (192 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: min:Minf_1047 5-enolpyruvylshikimate-3-phosphate synthase and cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
 
  
 0.828
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.805
EEF62213.1
KEGG: ote:Oter_1497 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.793
EEF57054.1
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mbu:Mbur_0884 KP-43 peptidase.
       0.642
EEF57055.1
SMART: Fibronectin type III domain protein; KEGG: gsu:GSU3219 fibronectin type III domain-containing protein.
       0.642
EEF57539.1
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.642
EEF57057.1
PFAM: type II secretion system protein E; KEGG: mmr:Mmar10_2780 type II secretion system protein E.
       0.548
EEF57058.1
PFAM: type II secretion system protein; KEGG: pen:PSEEN2334 type II secretion pathway protein F (XcpS-2).
       0.548
EEF57059.1
Type II secretory pathway component PulF-like protein; KEGG: glo:Glov_1450 type II secretion system protein.
       0.548
EEF57060.1
Hypothetical protein.
       0.548
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.