STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF57357.1PFAM: PKD domain containing protein; KEGG: sat:SYN_01127 RTX family of calcium-binding proteins. (788 aa)    
Predicted Functional Partners:
EEF63146.1
PFAM: Fibronectin type III domain protein; KEGG: gvi:glr0592 hypothetical protein.
 
  0.787
EEF61624.1
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: ana:all0364 similar to prohormone convertase.
  
 
  0.735
EEF59146.1
PFAM: Cna B domain protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel.
 
 
  0.578
EEF58653.1
Outer membrane adhesin like proteiin; KEGG: rde:RD1_1585 VCBS repeat domain protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; Integrin alpha beta-propellor repeat protein.
  
     0.561
EEF58073.1
PFAM: Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype; KEGG: ana:alr0276 hypothetical protein.
 
 
  0.558
EEF59129.1
TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel.
  
 
   0.525
EEF61632.1
PFAM: protein of unknown function DUF1555; KEGG: ava:Ava_3160 hemolysin-type calcium-binding region.
  
  0.491
EEF57358.1
PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_1009 major facilitator transporter.
       0.483
EEF63173.1
Hypothetical protein; KEGG: cja:CJA_0127 rhs repeat family.
  
     0.472
EEF57359.1
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ote:Oter_3671 protein tyrosine phosphatase.
       0.450
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.