STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF57674.1PFAM: fatty acid hydroxylase; KEGG: hch:HCH_01597 sterol desaturase. (404 aa)    
Predicted Functional Partners:
EEF61879.1
PFAM: phosphoesterase PA-phosphatase related; KEGG: mxa:MXAN_3854 PAP2 family protein.
 
 0.798
EEF57673.1
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: mta:Moth_0014 putative PTS IIA-like nitrogen-regulatory protein PtsN.
       0.773
EEF57225.1
TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: min:Minf_0399 squalene-hopene cyclase.
   
 0.755
EEF59508.1
TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: min:Minf_0399 squalene-hopene cyclase.
   
 0.755
EEF63268.1
KEGG: gfo:GFO_1939 hypothetical protein.
   
 0.755
EEF58107.1
PFAM: Squalene/phytoene synthase; KEGG: rme:Rmet_5617 farnesyl-diphosphate farnesyltransferase.
  
 0.746
EEF60931.1
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: mfa:Mfla_1469 squalene/phytoene synthase.
  
 0.746
EEF62884.1
KEGG: aas:Aasi_0709 hypothetical protein.
  
 0.746
EEF59085.1
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mba:Mbar_A3236 xylene monooxygenase electron transfer component.
  
 
 0.744
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.718
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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